Publications


You can find a full publication list at Google Scholar.


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A molecular network of the aging human brain provides insights into the pathology and cognitive decline of Alzheimer’s disease.

Mostafavi S, Gaiteri S, Sullivan SE, White CC, Tasaki S, Xu J, Taga M, Klein HU, Patrick E, Komashko V, McCabe C, Smith R, Bradshaw EM, Root DE, Regev A, Yu L, Chibnik LB, Schneider JA, Young-Pearse TL, Bennett DA, De Jager PL. Nature Neuroscience.

2018
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A transcriptomic atlas of aged human microglia.

Olah M*, Patrick E*, Villani AC, Xu J, White CC, Ryan KJ, Piehowski P, Kapasi A, Nejad P, Cimpean M, Connor S, Yung CJ, Frangieh M, McHenry A, Elyaman W, Petyuk V, Schneider JA, Bennett DA, De Jager PL, Bradshaw EM. Nature Communications.

2018
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Taking Kidneys for Granted? Time to Reflect on the Choices We Make.

Wong G, Howell M, Patrick E, Yang J. Transplantation.

2017
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Clinical course, therapeutic responses and outcomes in relapsing MOG antibody-associated demyelination.

Ramanathan S, Mohammad S, Tantsis E, Nguyen TK, Merheb V, Fung VS, White OB, Broadley S, Lechner-Scott J, Vucic S, Henderson APD, Barnett MH, Reddel SW, Brilot F, Dale RC on behalf of the Australasian and New Zealand MOG Study Group. Journal of Neurology, Neurosurgery and Psychiatry.

2017
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An xQTL map integrates the genetic architecture of the human brain's transcriptome and epigenome.

Ng B, White CC, Klein HU, Sieberts SK, McCabe C, Patrick E, Xu J, Yu L, Gaiteri C, Bennett DA, Mostafavi S, De Jager PL. Nature Neuroscience.

2017
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Dissecting the role of non-coding RNAs in the accumulation of amyloid and tau neuropathologies in Alzheimer’s disease.

Patrick E, Rajagopal S, Wong H-KA, McCabe C, Xu J, Tang A, Imboywa SH, Schneider JA, Pochet N, Krichevsky AM, Chibnik LB, Bennett DA, De Jager PL. Molecular Neurodegeneration.

2017
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A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types.

Patrick E, Schramm SJ, Ormerod JT, Scolyer RA, Mann GJ, Mueller S, Yang JYH. Oncotarget.

2016
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KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis

Yang P*, Patrick E*, Humphrey SJ, Ghazanfar S, and James DE, Jothi R, Yang JYH. Proteomics.

2016
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MicroRNA and mRNA expression profiling in metastatic melanoma reveal associations with BRAF mutation and patient prognosis.

Tembe V, Schramm SJ, Stark MS, Patrick E, Jayaswal V, Tang YH, Barbour A, Hayward NK, Thompson JF, Scolyer RA, Yang YH, Mann GJ. Pigment cell & melanoma research.

2015
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Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.

Patrick E, Buckley M, Muller S, Lin DM, Yang JYH. Bioinformatics.

2015
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Phonological Encoding in Mandarin Chinese: Evidence from Tongue Twisters.

Kember H, Croot K, Patrick E. Language and Speech.

2015
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Detection of multiple outbreaks using spatio-temporal EWMA-ordered statistics.

Sparks R, Patrick E. Communications in Statistics-Simulation and Computation.

2015
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Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.

Yang P*, Patrick E*, Tan SX, Fazakerley DJ, Burchfield J, Gribben C, Prior MJ, James DE, Yang JYH. Bioinformatics.

2014
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Hepatic metallothionein expression in chronic hepatitis C virus infection is IFNL3 genotype-dependent.

O'Connor KS, Parnell G, Patrick E, Ahlenstiel G, Suppiah V, van der Poorten D, Read SA, Leung R, Douglas MW, Yang JYH, Stewart GJ, Liddle C, George J, Booth DR. Genes and immunity.

2014
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Estimation of data-specific constitutive exons with RNA-Seq data.

Patrick E, Buckley M, Yang YH. BMC Bioinformatics.

2013
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Impaired Akt phosphorylation in insulin-resistant human muscle is accompanied by selective and heterogeneous downstream defects.

Tonks KT, Ng Y, Miller S, Coster AC, Samocha-Bonet D, Iseli TJ, Xu A, Patrick E, Yang JY, Junutula JR, Modrusan Z, Kolumam G, Stöckli J, Chisholm DJ, James DE, Greenfield JR. Diabetologia.

2013
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Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information.

Patrick E, Buckley M, Lin DM, Yang YH. BMC Genomics.

2013